Hi guys,
I lost my save files too (not after a connection issue), but I found something that works!
Go to this forum: http://www.gamefaqs.com/boards/63284...cry-3/64940537
Follow franklloyd_10's advice, BUT add this between steps 7 and 8:
7.5 - delete the new SAVE00*.sav file
I can again see my original game in the story mode selection section, and I hope you will too!!!
Ok, so many people have been having the same problem i have been having, where when you play Far Cry 3 for a second time, your save games are gone.
I turned off cloud saving and network features on the uplay launcher before I played Far Cry 3 and my save games never disappeared.
This might not work for you but it is worth a try.