Same problem here.
Killing the rogue agents in a control point doesn't end combat or finish capturing the control point. These bugged rogues do not drop a named item either. Have to fast travel away to fix the issue.
Rogues that spawn in mission or the Summit are working properly though.
I've seen this reported by a few players since 11.1 dropped. I've gone ahead and sent this and the other threads to be reviewed by the team so they can find a fix. For the time being, as unknown_merc44 suggested, it seems fast traveling away from the CP and then going back sorts the issue out.![]()