Firstly thank you for fixing 'Loot all as Junk'...
Unfortunately there are still problems specifically with looting mods; Shield mods, Firefly mods, Drone mods, and Turret mods all
have no option to mark as junk upon picking them up. This causes having to sort through all your mods and mark as junk after the fact. The next problem is all these new mods gained while playing are no longer marked as 'new' making them easily found as they once were.